Aggie Szymanska – UCI Neuroinformatics


Downloads

All downloadable code on this page is made available under the commons license. You are free to use and alter it as you see fit, provided you give credit to me (A.F. Szymanska) and/or cite the relevant publication(s).

MMiCE Detector

(A.F. Szymanska et al. Accurate detection of low SNR calcium transient waves using a matched filter. J Neurosci Meth (2016))

The MMiCE detector is a software package designed to detect calcium events from multiple calcium imaged neuronal somas, neuronal dendritic spines, or astrocytes. The input should be a time series of spectral intensity, for each pre-specified region of interest (such as somas or dendritic spines), as a function of time. The software is used through a GUI. Below, you can download sample data, sample training as well as tutorials describing how to use and train the detector .

Sample data Sample training / Training Tutorial / Detection Tutorial

 

MaDEC

(A.F. Szymanska et al. Automated detection and analysis of depolarization events in human cardiomyocytes using MaDEC. Computers in Biology and Medicine (2016))

MaDEC is a software package designed to detect, quantify, and compare depolarization events from voltage sensitive dye imaged beating cardiomyocytes. The input should be a time series of spectral intensity, for each pre-specified region of interest (such as a line-scan etc.), as a function of time. The software is used through a GUI.

Detection and Training Tutorial / MaDEC Tutorial