A list of publications can also be found at Google Scholar.
Journal articles
- A.A. Almet, Z. Cang, S. Jin, Q. Nie, The landscape of cell-cell communication through single-cell transcriptomics, Current Opinion in Systems Biology 26 (2021), pp 12—23.
- A.A. Almet, H.M. Byrne, P.K. Maini, D.E. Moulton, The role of mechanics in the growth and homeostasis of the intestinal crypt, Biomechanics and Modeling in Mechanobiology 20 (2021), pp 585—608.
- L.B. Romijn, A.A. Almet, C.W. Tan, J.M. Osborne, Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt, BMC Bioinformatics 21 (2020), pp 1—16.
- A.A. Almet, P.K. Maini, D.E. Moulton, H.M. Byrne, Modelling perspectives on the intestinal crypt, a canonical system for growth, mechanics, and remodelling, Current Opinion in Biomedical Engineering (2020).
- A.A. Almet, H.M. Byrne, P.K. Maini, D.E. Moulton, Post-buckling behaviour of a growing elastic rod, Journal of Mathematical Biology 78 (2019), pp. 777—814.
- D. Muraro, A. Parker, L. Vaux, S. Filippi, A.A. Almet, A.G. Fletcher, A.J.M. Watson, C. Pin, P.K. Maini, H.M. Byrne, Chronic TNFa-driven injury delays cell migration to villi in the intestinal epithelium, Journal of the Royal Society Interface 15 (145) (2018), pp. 20180037.
- A.A. Almet, B.D. Hughes, K.A. Landman, I.S. Näthke, J.M. Osborne, A multicellular model of intestinal crypt buckling and fission, Bulletin of Mathematical Biology 80 (2018) pp. 335-359.
- A.J. Langlands, A.A. Almet, P.L. Appleton, I.P. Newton, J.M. Osborne, I.S. Näthke, Paneth cell-rich regions separated by a cluster of Lgr5+ cells initiate crypt fission in the intestinal stem cell niche, PLoS Biology, 14 (6): e1002491 (2016), 31 pp.
- A.A. Almet, M. Pan, B.D. Hughes, K.A. Landman, When push comes to shove: Exclusion processes with nonlocal consequences, Physica A 437 (2015) pp. 119—129.
Theses
- A.A. Almet, Biomechanics of Intestinal Crypt Morphogenesis, DPhil Thesis, University of Oxford (2020).
- A.A. Almet, Multiscale Modelling of Intestinal Crypt Fission, MSc Thesis, University of Melbourne (2015).