Publications

A list of publications can also be found at Google Scholar.

Journal articles

  1. A.A. Almet, Z. Cang, S. Jin, Q. Nie, The landscape of cell-cell communication through single-cell transcriptomics, Current Opinion in Systems Biology 26 (2021), pp 12—23.
  2. A.A. Almet, H.M. Byrne, P.K. Maini, D.E. Moulton, The role of mechanics in the growth and homeostasis of the intestinal crypt, Biomechanics and Modeling in Mechanobiology 20 (2021), pp 585—608.
  3. L.B. Romijn, A.A. Almet, C.W. Tan, J.M. Osborne, Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt, BMC Bioinformatics 21 (2020), pp 1—16.
  4. A.A. Almet, P.K. Maini, D.E. Moulton, H.M. Byrne, Modelling perspectives on the intestinal crypt, a canonical system for growth, mechanics, and remodelling, Current Opinion in Biomedical Engineering (2020).
  5. A.A. Almet, H.M. Byrne, P.K. Maini, D.E. Moulton, Post-buckling behaviour of a growing elastic rod, Journal of Mathematical Biology 78 (2019), pp. 777—814.
  6. D. Muraro, A. Parker, L. Vaux, S. Filippi, A.A. Almet, A.G. Fletcher, A.J.M. Watson, C. Pin, P.K. Maini, H.M. Byrne, Chronic TNFa-driven injury delays cell migration to villi in the intestinal epithelium, Journal of the Royal Society Interface 15 (145) (2018), pp. 20180037.
  7. A.A. Almet, B.D. Hughes, K.A. Landman, I.S. Näthke, J.M. Osborne, A multicellular model of intestinal crypt buckling and fission, Bulletin of Mathematical Biology 80 (2018) pp. 335-359.
  8. A.J. Langlands, A.A. Almet, P.L. Appleton, I.P. Newton, J.M. Osborne, I.S. Näthke, Paneth cell-rich regions separated by a cluster of Lgr5+ cells initiate crypt fission in the intestinal stem cell niche, PLoS Biology, 14 (6): e1002491 (2016), 31 pp.
  9. A.A. Almet, M. Pan, B.D. Hughes, K.A. Landman, When push comes to ­­shove: Exclusion processes with nonlocal consequences, Physica A 437 (2015) pp. 119—129.

Theses

  1. A.A. Almet, Biomechanics of Intestinal Crypt Morphogenesis, DPhil Thesis, University of Oxford (2020).
  2. A.A. Almet, Multiscale Modelling of Intestinal Crypt Fission, MSc Thesis, University of Melbourne (2015).